Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
54
ChIP-seq
2
ATAC-seq
Assay category
207
DNA accessibility
54
DNA binding
Target of assay
49
histone
49
histone modification
27
broad histone mark
22
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
41
August, 2017
12
November, 2017
9
November, 2018
8
October, 2019
2
October, 2017
1
March, 2019
1
November, 2020
Available data
2735
bam
2533
bigWig
1481
tsv
1337
bed narrowPeak
855
fastq
684
bigBed narrowPeak
374
tagAlign
261
bed broadPeak
256
bed bed3+
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
255
Homo sapiens
Biosample type
211
tissue
cell line
49
primary cell
1
in vitro differentiated cells
Organ
78
kidney
46
musculature of body
45
brain
36
limb
30
heart
22
epithelium
20
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
5
liver
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
261
AMP
Genome assembly (visualization)
237
hg19
235
GRCh38
Lab
259
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
2
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
biosample_type!
cell line
BIOSAMPLE
ASSAY
261 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 45 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download