Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
106
ChIP-seq
2
ATAC-seq
Assay category
197
DNA accessibility
106
DNA binding
Target of assay
59
histone
59
histone modification
47
transcription factor
33
broad histone mark
26
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
66
November, 2017
41
August, 2017
9
November, 2018
3
October, 2019
2
October, 2017
1
March, 2019
1
November, 2020
Available data
3119
bam
2888
bigWig
1596
bed narrowPeak
1532
tsv
1263
fastq
944
bigBed narrowPeak
388
tagAlign
303
bed broadPeak
268
bigBed broadPeak
246
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
297
Homo sapiens
Biosample type
206
tissue
59
cell line
37
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
46
musculature of body
45
brain
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
303
AMP
Genome assembly (visualization)
280
hg19
265
GRCh38
Lab
301
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
vasculature
BIOSAMPLE
ASSAY
303 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download