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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
DNase-seq
94
ChIP-seq
Assay category
188
DNA accessibility
94
DNA binding
Target of assay
47
histone
47
histone modification
47
transcription factor
25
broad histone mark
22
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
176
June, 2019
66
November, 2017
29
August, 2017
7
November, 2018
2
October, 2019
1
November, 2020
1
October, 2017
Available data
2484
bam
2359
bigWig
1455
bed narrowPeak
1115
tsv
853
bigBed narrowPeak
846
fastq
369
tagAlign
282
bed broadPeak
261
bigBed broadPeak
227
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
14
bedpe bed3+
13
hic
12
bed bed3
8
csv
7
bed bedgraph
3
tar
2
hdf5
2
ibed
1
tagAlign bed3+
1
vcf
Organism
282
Homo sapiens
Biosample type
186
tissue
58
cell line
37
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
46
musculature of body
45
brain
36
limb
30
heart
22
epithelium
pancreas
18
ureter
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
282
AMP
Genome assembly (visualization)
262
hg19
251
GRCh38
Lab
282
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
vasculature
pancreas
BIOSAMPLE
ASSAY
282 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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