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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
114
ChIP-seq
19
Hi-C
2
ATAC-seq
Assay category
207
DNA accessibility
114
DNA binding
19
3D chromatin structure
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
70
November, 2017
40
August, 2017
11
October, 2019
9
November, 2018
8
March, 2020
4
October, 2017
3
October, 2022
2
August, 2021
2
March, 2019
2
November, 2019
1
March, 2023
1
November, 2020
Available data
3101
bam
2870
bigWig
1645
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
334
Homo sapiens
Biosample type
224
tissue
61
cell line
55
primary cell
in vitro differentiated cells
Organ
79
kidney
65
liver
48
musculature of body
47
brain
36
limb
33
heart
28
epithelium
28
pancreas
20
vasculature
18
ureter
16
blood vessel
9
connective tissue
6
vein
4
artery
4
eye
3
adipose tissue
2
nerve
1
spleen
Project
336
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
315
hg19
282
GRCh38
Lab
331
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
4
audit script error
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
340 results
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DNase-seq
ChIP-seq
Hi-C
ATAC-seq
tissue
heart
18
1
brain
14
3
muscle of arm
17
kidney
13
1
muscle of leg
13
+ See 47 more…
cell line
HepG2
58
1
EndoC_BH1
1
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 22 more…
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