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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
Assay category
21
DNA binding
Target of assay
48
histone
48
histone modification
44
transcription factor
27
broad histone mark
21
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
10
August, 2017
10
November, 2017
1
October, 2017
Available data
328
bigWig
325
bed narrowPeak
302
bam
127
tagAlign
123
bigBed narrowPeak
70
fastq
21
bed broadPeak
11
bed bed3+
6
bigBed broadPeak
1
tagAlign bed3+
Organism
19
Homo sapiens
Biosample type
15
tissue
primary cell
6
cell line
Organ
6
liver
5
brain
5
musculature of body
4
pancreas
1
adipose tissue
1
connective tissue
Project
21
AMP
Genome assembly (visualization)
21
hg19
11
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
biosample_type!
primary cell
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
tissue
skeletal muscle tissue
5
islet of Langerhans
2
pancreas
2
brain
1
caudate nucleus
1
+ See 4 more…
cell line
HepG2
6
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