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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
DNase-seq
29
ChIP-seq
2
ATAC-seq
Assay category
180
DNA accessibility
29
DNA binding
Target of assay
29
histone
29
histone modification
18
broad histone mark
11
narrow histone mark
Date released
163
June, 2019
November, 2017
27
August, 2017
9
November, 2018
5
October, 2019
4
October, 2017
1
March, 2019
Available data
2400
bam
2191
bigWig
1330
tsv
1175
bed narrowPeak
634
fastq
627
bigBed narrowPeak
236
bed bed3+
220
tagAlign
209
bed broadPeak
178
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
203
Homo sapiens
Biosample type
207
tissue
primary cell
1
cell line
1
in vitro differentiated cells
Organ
68
kidney
45
musculature of body
36
limb
30
brain
27
heart
21
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
4
connective tissue
3
adipose tissue
3
eye
3
liver
2
nerve
1
spleen
Project
209
AMP
Genome assembly (visualization)
192
hg19
188
GRCh38
Lab
207
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
biosample_type!
primary cell
month_released!
November, 2017
BIOSAMPLE
ASSAY
209 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
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