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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
27
DNase-seq
Assay category
79
DNA binding
27
DNA accessibility
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
21
June, 2019
15
August, 2017
5
October, 2019
1
November, 2020
Available data
1277
bam
1208
bigWig
970
fastq
774
bed narrowPeak
458
bigBed narrowPeak
377
tsv
157
tagAlign
153
zippedFastqFolder
106
bed broadPeak
106
bigBed broadPeak
63
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
7
bed bed3
7
hic
6
bed bedgraph
6
bedpe bed3+
5
hdf5
4
tar
3
cool
3
txt
2
csv
1
vcf
Organism
106
Homo sapiens
Biosample type
tissue
59
cell line
46
primary cell
1
in vitro differentiated cells
Organ
60
liver
21
epithelium
11
brain
11
vasculature
9
kidney
8
blood vessel
6
connective tissue
4
vein
2
heart
1
eye
1
musculature of body
1
pancreas
Project
106
AMP
Genome assembly (visualization)
99
hg19
88
GRCh38
Lab
106
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
106 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
13
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
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in vitro differentiated cells
adipocyte
1
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