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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
DNase-seq
24
ChIP-seq
4
Hi-C
2
total RNA-seq
1
pCHi-C
Assay category
28
DNA accessibility
24
DNA binding
4
3D chromatin structure
2
Transcription
Target of assay
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
24
June, 2019
14
August, 2017
6
November, 2017
4
July, 2019
4
October, 2019
3
August, 2021
2
May, 2021
1
February, 2021
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
59
Homo sapiens
Biosample type
242
tissue
61
cell line
59
primary cell
26
in vitro differentiated cells
3
stem cell
Organ
27
epithelium
14
brain
14
vasculature
10
blood vessel
10
kidney
8
connective tissue
6
liver
4
vein
3
heart
1
eye
1
musculature of body
Project
59
AMP
Genome assembly (visualization)
52
hg19
48
GRCh38
Lab
57
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
59 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
total RNA-seq
pCHi-C
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
endothelial cell of umbilical vein
2
2
hepatocyte
1
3
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