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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
35
ChIP-seq
16
WGBS
9
RRBS
2
ATAC-seq
Assay category
178
DNA accessibility
35
DNA binding
25
DNA methylation
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
Date released
163
June, 2019
31
August, 2017
15
November, 2018
14
July, 2019
6
November, 2017
4
October, 2017
4
October, 2019
1
March, 2019
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
232
Homo sapiens
Biosample type
238
tissue
60
cell line
59
primary cell
1
in vitro differentiated cells
Organ
69
kidney
48
musculature of body
37
brain
37
limb
34
heart
26
pancreas
18
ureter
6
blood vessel
6
vasculature
5
adipose tissue
5
connective tissue
4
artery
4
liver
3
eye
3
spleen
2
nerve
1
pericardium
Project
238
AMP
Genome assembly (visualization)
207
GRCh38
205
hg19
Lab
236
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
238 results
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Clear Filters
DNase-seq
ChIP-seq
WGBS
RRBS
ATAC-seq
tissue
heart
18
1
brain
14
3
1
muscle of arm
17
skeletal muscle tissue
13
2
kidney
13
1
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