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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
DNase-seq
93
ChIP-seq
17
WGBS
9
RRBS
2
ATAC-seq
Assay category
179
DNA accessibility
93
DNA binding
26
DNA methylation
Target of assay
49
histone
49
histone modification
44
transcription factor
28
broad histone mark
21
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
163
June, 2019
64
November, 2017
31
August, 2017
16
November, 2018
14
July, 2019
5
October, 2019
4
October, 2017
1
March, 2019
Available data
2489
bam
2294
bigWig
1388
bed narrowPeak
1195
tsv
916
bigBed narrowPeak
804
fastq
272
bed broadPeak
258
tagAlign
235
bigBed broadPeak
208
bed bed3+
158
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
bed bed3
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
292
Homo sapiens
Biosample type
238
tissue
60
cell line
59
primary cell
1
in vitro differentiated cells
Organ
69
kidney
63
liver
48
musculature of body
37
brain
37
limb
34
heart
27
pancreas
18
ureter
6
blood vessel
6
vasculature
5
adipose tissue
5
connective tissue
4
artery
3
eye
3
spleen
2
nerve
1
pericardium
Project
298
AMP
Genome assembly (visualization)
264
hg19
253
GRCh38
Lab
296
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
298 results
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Clear Filters
DNase-seq
ChIP-seq
WGBS
RRBS
ATAC-seq
tissue
heart
18
1
brain
14
3
1
muscle of arm
17
skeletal muscle tissue
13
2
kidney
13
1
+ See 49 more…
cell line
HepG2
58
1
Panc1
1
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