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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
ChIP-seq
177
DNase-seq
103
total RNA-seq
29
ATAC-seq
18
WGBS
9
RRBS
2
FAIRE-seq
Assay category
246
DNA binding
208
DNA accessibility
103
Transcription
27
DNA methylation
Target of assay
100
histone modification
99
histone
79
transcription factor
67
control
59
broad histone mark
40
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
August, 2017
163
June, 2019
58
October, 2018
48
December, 2017
26
November, 2018
24
May, 2022
17
October, 2017
14
July, 2019
7
December, 2018
7
January, 2019
6
April, 2018
6
November, 2017
6
September, 2017
4
October, 2019
2
July, 2018
1
March, 2019
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
577
Homo sapiens
Biosample type
584
tissue
447
primary cell
428
cell line
141
in vitro differentiated cells
4
stem cell
Organ
225
pancreas
83
liver
69
kidney
48
musculature of body
45
adipose tissue
45
connective tissue
44
brain
37
limb
34
heart
24
spleen
18
ureter
6
blood vessel
6
vasculature
4
artery
3
eye
2
nerve
1
pericardium
Project
584
AMP
Genome assembly (visualization)
477
hg19
460
GRCh38
Lab
558
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
584 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
WGBS
RRBS
FAIRE-seq
tissue
islet of Langerhans
34
1
103
20
1
1
liver
67
2
1
1
body of pancreas
33
4
4
2
brain
9
14
1
spleen
20
1
1
2
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