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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
DNase-seq
35
ChIP-seq
10
Hi-C
2
ATAC-seq
Assay category
174
DNA accessibility
35
DNA binding
10
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
Date released
163
June, 2019
26
August, 2017
9
November, 2018
7
March, 2020
6
November, 2017
October, 2019
4
October, 2017
2
March, 2019
1
August, 2021
1
November, 2019
Available data
1721
bam
1612
bigWig
1068
tsv
833
bed narrowPeak
514
bigBed narrowPeak
377
fastq
209
bed broadPeak
201
bed bed3+
189
tagAlign
172
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
213
Homo sapiens
Biosample type
219
tissue
60
cell line
50
primary cell
3
in vitro differentiated cells
Organ
69
kidney
47
musculature of body
36
brain
32
limb
29
heart
23
pancreas
18
ureter
4
blood vessel
4
liver
4
vasculature
3
adipose tissue
3
connective tissue
3
eye
2
artery
1
spleen
Project
219
AMP
Genome assembly (visualization)
202
hg19
187
GRCh38
Lab
215
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
October, 2019
BIOSAMPLE
ASSAY
219 results
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DNase-seq
ChIP-seq
Hi-C
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
1
muscle of leg
13
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