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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
DNase-seq
15
ChIP-seq
2
ATAC-seq
Assay category
174
DNA accessibility
15
DNA binding
Target of assay
35
histone
35
histone modification
broad histone mark
15
narrow histone mark
Date released
163
June, 2019
10
August, 2017
9
November, 2018
4
November, 2017
October, 2019
2
October, 2017
1
March, 2019
Available data
1538
bam
1398
bigWig
1068
tsv
619
bed narrowPeak
340
bigBed narrowPeak
332
fastq
195
bed bed3+
189
bed broadPeak
172
bigBed broadPeak
157
txt
113
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
187
Homo sapiens
Biosample type
189
tissue
50
cell line
39
primary cell
1
in vitro differentiated cells
Organ
68
kidney
37
musculature of body
32
brain
32
limb
27
heart
18
ureter
12
pancreas
3
adipose tissue
3
blood vessel
3
connective tissue
3
eye
3
liver
3
vasculature
2
artery
1
spleen
Project
189
AMP
Genome assembly (visualization)
179
GRCh38
172
hg19
Lab
187
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
month_released!
October, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
189 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
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