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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
DNase-seq
34
ChIP-seq
2
ATAC-seq
Assay category
176
DNA accessibility
34
DNA binding
Target of assay
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
Date released
162
June, 2019
25
August, 2017
8
November, 2018
6
November, 2017
4
October, 2017
4
October, 2019
1
March, 2019
Available data
1467
bam
1309
bigWig
931
bed narrowPeak
677
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
204
Homo sapiens
Biosample type
210
tissue
59
cell line
49
primary cell
1
in vitro differentiated cells
Organ
68
kidney
45
musculature of body
36
brain
36
limb
27
heart
20
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
adipose tissue
3
connective tissue
3
eye
3
liver
2
nerve
1
spleen
Project
210
AMP
Genome assembly (visualization)
193
hg19
189
GRCh38
Lab
208
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
210 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
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