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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
391
ChIP-seq
175
DNase-seq
4
FAIRE-seq
3
ATAC-seq
Assay category
391
DNA binding
182
DNA accessibility
Target of assay
331
histone
331
histone modification
216
broad histone mark
115
narrow histone mark
60
transcription factor
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
162
June, 2019
93
May, 2019
64
April, 2019
58
November, 2017
46
October, 2019
40
October, 2018
39
August, 2017
36
December, 2017
16
November, 2018
7
October, 2017
6
January, 2019
3
December, 2018
2
July, 2019
1
March, 2019
Available data
1467
bam
1349
bigWig
971
bed narrowPeak
677
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
567
Homo sapiens
Biosample type
573
tissue
361
cell line
111
primary cell
17
in vitro differentiated cells
Organ
117
brain
88
heart
87
kidney
84
limb
70
pancreas
62
blood vessel
62
vasculature
51
musculature of body
49
liver
26
nerve
25
artery
18
ureter
13
spleen
adipose tissue
11
connective tissue
3
eye
Project
573
AMP
Genome assembly (visualization)
547
GRCh38
504
hg19
Lab
571
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
573 results
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ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
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