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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
DNase-seq
9
ChIP-seq
2
ATAC-seq
Assay category
176
DNA accessibility
9
DNA binding
Target of assay
9
histone
9
histone modification
5
narrow histone mark
4
broad histone mark
Date released
162
June, 2019
August, 2017
8
November, 2018
6
November, 2017
4
October, 2017
4
October, 2019
1
March, 2019
Available data
1314
bam
1188
bigWig
908
bed narrowPeak
588
tsv
531
bigBed narrowPeak
185
bed broadPeak
179
tagAlign
177
bed bed3+
177
fastq
174
bigBed broadPeak
157
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
185
Homo sapiens
Biosample type
185
tissue
59
cell line
35
primary cell
Organ
68
kidney
36
brain
36
limb
32
musculature of body
27
heart
18
ureter
8
pancreas
5
blood vessel
5
vasculature
4
artery
3
eye
3
liver
adipose tissue
2
connective tissue
2
nerve
1
spleen
Project
185
AMP
Genome assembly (visualization)
183
GRCh38
168
hg19
Lab
183
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
organ_slims!
adipose tissue
month_released!
August, 2017
BIOSAMPLE
ASSAY
185 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
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