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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
DNase-seq
28
ChIP-seq
2
ATAC-seq
Assay category
176
DNA accessibility
28
DNA binding
Target of assay
28
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
Date released
162
June, 2019
19
August, 2017
8
November, 2018
6
November, 2017
4
October, 2017
4
October, 2019
1
March, 2019
Available data
1460
bam
1343
bigWig
965
bed narrowPeak
677
tsv
545
bigBed narrowPeak
327
fastq
223
tagAlign
204
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
204
Homo sapiens
Biosample type
204
tissue
59
cell line
49
primary cell
1
in vitro differentiated cells
Organ
68
kidney
45
musculature of body
36
brain
36
limb
27
heart
18
ureter
14
pancreas
5
blood vessel
5
vasculature
4
artery
adipose tissue
3
connective tissue
3
eye
3
liver
2
nerve
1
spleen
Project
204
AMP
Genome assembly (visualization)
187
hg19
183
GRCh38
Lab
202
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
204 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
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