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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
2
ATAC-seq
2
DNase-seq
Assay category
108
DNA binding
4
DNA accessibility
Target of assay
61
histone
61
histone modification
47
transcription factor
34
broad histone mark
27
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
66
November, 2017
41
August, 2017
4
October, 2017
1
March, 2019
Available data
3207
bam
2974
bigWig
1644
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
305
bed broadPeak
268
bigBed broadPeak
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
106
Homo sapiens
Biosample type
58
cell line
37
tissue
16
primary cell
1
in vitro differentiated cells
Organ
58
liver
15
brain
14
pancreas
13
musculature of body
6
epithelium
vasculature
4
blood vessel
2
connective tissue
2
vein
1
adipose tissue
Project
112
AMP
Genome assembly (visualization)
111
hg19
74
GRCh38
Lab
110
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
files.file_type!
bed bed3+
organ_slims!
vasculature
BIOSAMPLE
ASSAY
112 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
58
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
in vitro differentiated cells
adipocyte
1
See all biosamples
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