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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
1
ATAC-seq
Assay category
8
DNA binding
1
DNA accessibility
Target of assay
4
histone
4
histone modification
4
transcription factor
3
broad histone mark
1
narrow histone mark
Date released
6
November, 2017
2
October, 2019
1
March, 2019
Available data
433
bam
407
fastq
239
bigWig
200
tsv
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
9
Homo sapiens
Biosample type
6
cell line
2
primary cell
1
tissue
Organ
6
liver
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
pancreas
Project
9
AMP
Genome assembly (visualization)
9
hg19
GRCh38
Lab
8
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
assembly!
GRCh38
BIOSAMPLE
ASSAY
9 results
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ChIP-seq
ATAC-seq
cell line
HepG2
6
primary cell
endothelial cell of umbilical vein
2
tissue
islet of Langerhans
1
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