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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
2
ATAC-seq
Assay category
16
DNA binding
2
DNA accessibility
Target of assay
12
histone
12
histone modification
7
broad histone mark
5
narrow histone mark
4
transcription factor
Date released
7
August, 2017
7
November, 2017
2
October, 2019
1
March, 2019
1
October, 2017
Available data
3335
bam
3061
bigWig
1717
bed narrowPeak
1591
tsv
1356
fastq
bigBed narrowPeak
383
tagAlign
276
bed broadPeak
252
bigBed broadPeak
239
bed bed3+
160
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
18
Homo sapiens
Biosample type
10
tissue
6
cell line
2
primary cell
Organ
musculature of body
8
pancreas
6
liver
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
adipose tissue
1
brain
1
connective tissue
Project
18
AMP
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
16
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent control read length
files.file_type!
bigBed narrowPeak
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
18 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
islet of Langerhans
6
2
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
cell line
HepG2
6
primary cell
endothelial cell of umbilical vein
2
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