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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
2
ATAC-seq
Assay category
14
DNA binding
2
DNA accessibility
Target of assay
25
histone
25
histone modification
broad histone mark
10
narrow histone mark
4
transcription factor
Date released
8
August, 2017
6
November, 2017
1
March, 2019
1
October, 2017
Available data
3014
bam
2722
bigWig
1600
tsv
1377
bed narrowPeak
1240
fastq
bigBed narrowPeak
286
bed broadPeak
269
bigBed broadPeak
261
bed bed3+
251
tagAlign
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
16
Homo sapiens
Biosample type
11
tissue
5
cell line
Organ
5
liver
5
musculature of body
4
pancreas
1
adipose tissue
1
brain
1
connective tissue
Project
16
AMP
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
14
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent control read length
files.file_type!
bigBed narrowPeak
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
16 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
skeletal muscle tissue
5
islet of Langerhans
2
2
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
cell line
HepG2
5
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