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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
ChIP-seq
14
ATAC-seq
Assay category
220
DNA accessibility
Date released
187
June, 2019
10
February, 2023
9
November, 2018
7
October, 2019
2
August, 2017
2
February, 2021
1
March, 2019
1
November, 2020
1
October, 2017
Available data
1814
bam
1779
bigWig
1600
tsv
501
fastq
492
bed narrowPeak
241
bigBed narrowPeak
220
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
220
Homo sapiens
Biosample type
183
tissue
29
primary cell
6
in vitro differentiated cells
2
cell line
Organ
78
kidney
36
limb
33
brain
33
musculature of body
30
heart
18
ureter
16
epithelium
15
connective tissue
11
vasculature
9
blood vessel
9
pancreas
6
liver
4
artery
4
bone element
4
eye
4
skeleton
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
220
AMP
Genome assembly (visualization)
208
GRCh38
196
hg19
Lab
218
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
1
inconsistent replicate
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
220 results
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Clear Filters
DNase-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 44 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
osteoblast
1
1
+ See 18 more…
in vitro differentiated cells
chondrocyte
5
adipocyte
1
cell line
HepG2
1
Panc1
1
See all biosamples
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