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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
165
ChIP-seq
124
total RNA-seq
46
ATAC-seq
28
DNase-seq
8
single cell RNA-seq
4
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
165
DNA binding
134
Transcription
75
DNA accessibility
4
3D chromatin structure
Target of assay
157
histone
157
histone modification
85
broad histone mark
72
narrow histone mark
6
control
5
RNA binding protein
5
transcription factor
Date released
171
May, 2021
90
May, 2020
47
June, 2019
23
October, 2019
22
July, 2019
5
April, 2018
5
December, 2019
5
November, 2020
4
May, 2019
3
August, 2021
2
February, 2021
1
August, 2017
Available data
613
bigWig
609
bam
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
378
Homo sapiens
Biosample type
1493
tissue
378
primary cell
150
cell line
142
in vitro differentiated cells
Organ
64
epithelium
29
connective tissue
28
kidney
23
vasculature
21
blood vessel
15
vein
11
brain
11
liver
11
musculature of body
10
heart
5
pancreas
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
198
AMP
180
T1D
Genome assembly (visualization)
371
hg19
290
GRCh38
Lab
215
Kyle Gaulton, UCSD
163
AMP-T2D consortium
Audit category:
31
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
378 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
84
53
2
CD8-positive, alpha-beta T cell
33
4
2
endothelial cell of umbilical vein
12
2
1
epithelial cell of proximal tubule
8
1
1
hepatocyte
3
5
1
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