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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
4
Hi-C
2
ATAC-seq
Assay category
23
DNA binding
4
3D chromatin structure
2
DNA accessibility
Target of assay
23
histone
23
histone modification
14
broad histone mark
9
narrow histone mark
Date released
20
August, 2017
4
July, 2019
2
October, 2019
1
March, 2019
1
November, 2017
1
October, 2017
Available data
2810
bam
2647
bigWig
1481
tsv
1413
bed narrowPeak
931
fastq
bigBed narrowPeak
378
tagAlign
270
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
29
Homo sapiens
Biosample type
23
tissue
cell line
6
primary cell
Organ
13
musculature of body
8
pancreas
4
blood vessel
4
brain
4
epithelium
4
vasculature
2
connective tissue
2
vein
1
adipose tissue
1
liver
Project
29
AMP
Genome assembly (visualization)
28
hg19
1
GRCh38
Lab
27
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
biosample_type!
cell line
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
29 results
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Clear Filters
ChIP-seq
Hi-C
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
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