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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
44
ChIP-seq
4
Hi-C
2
ATAC-seq
Assay category
207
DNA accessibility
44
DNA binding
4
3D chromatin structure
Target of assay
42
histone
42
histone modification
26
broad histone mark
16
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
41
August, 2017
November, 2017
9
November, 2018
8
October, 2019
4
July, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2732
bam
2581
bigWig
1481
tsv
1349
bed narrowPeak
922
fastq
624
bigBed narrowPeak
312
tagAlign
270
bed bed3+
251
bed broadPeak
220
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
249
Homo sapiens
Biosample type
207
tissue
47
primary cell
cell line
1
in vitro differentiated cells
Organ
78
kidney
46
musculature of body
38
brain
36
limb
30
heart
20
epithelium
20
pancreas
18
ureter
15
vasculature
13
blood vessel
11
connective tissue
6
liver
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
255
AMP
Genome assembly (visualization)
231
hg19
226
GRCh38
Lab
253
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
biosample_type!
cell line
month_released!
November, 2017
BIOSAMPLE
ASSAY
255 results
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DNase-seq
ChIP-seq
Hi-C
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 19 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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