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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
DNase-seq
56
ChIP-seq
4
Hi-C
2
ATAC-seq
Assay category
203
DNA accessibility
56
DNA binding
4
3D chromatin structure
Target of assay
51
histone
51
histone modification
28
broad histone mark
23
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
185
June, 2019
41
August, 2017
12
November, 2017
9
November, 2018
6
October, 2019
4
July, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2774
bam
2618
bigWig
1475
tsv
1351
bed narrowPeak
931
fastq
662
bigBed narrowPeak
378
tagAlign
266
bed bed3+
259
bed broadPeak
222
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
257
Homo sapiens
Biosample type
209
tissue
cell line
53
primary cell
1
in vitro differentiated cells
Organ
78
kidney
50
brain
46
musculature of body
36
limb
30
heart
24
epithelium
20
pancreas
19
vasculature
18
ureter
15
blood vessel
11
connective tissue
6
liver
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
263
AMP
Genome assembly (visualization)
239
hg19
233
GRCh38
Lab
261
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
biosample_type!
cell line
organ_slims!
artery
BIOSAMPLE
ASSAY
263 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
+ See 19 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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