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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
15
ChIP-seq
3
Hi-C
Assay category
32
DNA accessibility
15
DNA binding
3
3D chromatin structure
Target of assay
12
histone
12
histone modification
8
narrow histone mark
4
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
12
November, 2017
3
July, 2019
3
October, 2017
2
November, 2018
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
50
Homo sapiens
Biosample type
36
tissue
14
primary cell
Organ
78
kidney
50
brain
46
musculature of body
36
limb
30
heart
24
epithelium
20
pancreas
19
vasculature
18
ureter
15
blood vessel
11
connective tissue
6
liver
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
50
AMP
Genome assembly (visualization)
46
GRCh38
40
hg19
Lab
50
AMP-T2D consortium
Audit category:
2
missing controlled_by
biosample_type!
cell line
BIOSAMPLE
ASSAY
50 results
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DNase-seq
ChIP-seq
Hi-C
tissue
brain
14
3
caudate nucleus
1
1
cingulate gyrus
2
frontal cortex
2
middle frontal area 46
2
+ See 11 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
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