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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
2
ATAC-seq
1
Hi-C
Assay category
27
DNA binding
2
DNA accessibility
1
3D chromatin structure
Target of assay
23
histone
23
histone modification
13
broad histone mark
10
narrow histone mark
4
transcription factor
Date released
20
August, 2017
7
November, 2017
1
March, 2019
1
October, 2017
1
October, 2019
Available data
2783
bam
2556
bigWig
1522
bed narrowPeak
1330
tsv
949
fastq
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
30
Homo sapiens
Biosample type
23
tissue
7
cell line
primary cell
Organ
13
musculature of body
9
pancreas
6
liver
1
adipose tissue
1
brain
1
connective tissue
Project
30
AMP
Genome assembly (visualization)
29
hg19
2
GRCh38
Lab
28
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
30 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
cell line
HepG2
6
Panc1
1
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