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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
92
ChIP-seq
2
ATAC-seq
1
Hi-C
Assay category
178
DNA accessibility
92
DNA binding
1
3D chromatin structure
Target of assay
48
histone
48
histone modification
44
transcription factor
28
broad histone mark
20
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
162
June, 2019
64
November, 2017
26
August, 2017
8
November, 2018
6
October, 2019
4
October, 2017
1
March, 2019
Available data
2343
bam
2133
bigWig
1509
bed narrowPeak
931
tsv
923
bigBed narrowPeak
905
fastq
290
tagAlign
270
bed broadPeak
234
bigBed broadPeak
230
bed bed3+
161
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
18
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
265
Homo sapiens
Biosample type
210
tissue
60
cell line
primary cell
1
in vitro differentiated cells
Organ
68
kidney
61
liver
45
musculature of body
36
brain
36
limb
27
heart
22
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
4
connective tissue
adipose tissue
3
eye
2
nerve
1
spleen
Project
271
AMP
Genome assembly (visualization)
254
hg19
236
GRCh38
Lab
269
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
biosample_type!
primary cell
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
271 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
58
Panc1
1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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