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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
5
Hi-C
2
ATAC-seq
Assay category
35
DNA binding
5
3D chromatin structure
2
DNA accessibility
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
Date released
26
August, 2017
6
November, 2017
4
July, 2019
4
October, 2017
1
March, 2019
1
October, 2019
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
36
Homo sapiens
Biosample type
37
tissue
4
primary cell
1
cell line
Organ
15
pancreas
13
musculature of body
12
brain
2
blood vessel
2
connective tissue
2
epithelium
2
vasculature
1
adipose tissue
1
liver
Project
42
AMP
Genome assembly (visualization)
41
hg19
16
GRCh38
Lab
40
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
42 results
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Clear Filters
ChIP-seq
Hi-C
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
Panc1
1
See all biosamples
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