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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
75
ChIP-seq
5
Hi-C
2
ATAC-seq
Assay category
206
DNA accessibility
75
DNA binding
5
3D chromatin structure
Target of assay
47
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
70
November, 2017
August, 2017
10
October, 2019
9
November, 2018
4
July, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
3110
bam
2897
bigWig
1675
bed narrowPeak
1511
tsv
1071
fastq
1000
bigBed narrowPeak
313
tagAlign
281
bed broadPeak
270
bigBed broadPeak
240
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
286
Homo sapiens
Biosample type
187
tissue
60
cell line
39
primary cell
Organ
78
kidney
64
liver
50
brain
36
limb
33
musculature of body
30
heart
24
epithelium
19
vasculature
18
ureter
15
blood vessel
10
pancreas
9
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
286
AMP
Genome assembly (visualization)
264
GRCh38
262
hg19
Lab
284
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2017
BIOSAMPLE
ASSAY
286 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
58
Panc1
1
1
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 18 more…
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