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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
1
ATAC-seq
Assay category
5
3D chromatin structure
1
DNA accessibility
Target of assay
21
histone
histone modification
12
broad histone mark
9
narrow histone mark
Date released
4
July, 2019
1
October, 2017
1
October, 2019
Available data
bam
2300
bigWig
1600
tsv
1128
fastq
966
bed narrowPeak
651
bigBed narrowPeak
257
bed broadPeak
255
bigBed broadPeak
248
bed bed3+
161
txt
153
zippedFastqFolder
77
tagAlign
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
6
Homo sapiens
Biosample type
4
primary cell
1
cell line
1
tissue
Organ
3
brain
2
blood vessel
2
epithelium
2
pancreas
2
vasculature
1
connective tissue
1
liver
Project
6
AMP
Genome assembly (visualization)
6
hg19
2
GRCh38
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
target.investigated_as!
histone modification
files.file_type!
bam
BIOSAMPLE
ASSAY
6 results
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Clear Filters
Hi-C
ATAC-seq
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
Panc1
1
tissue
islet of Langerhans
1
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