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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
49
ChIP-seq
5
Hi-C
2
ATAC-seq
Assay category
208
DNA accessibility
49
DNA binding
5
3D chromatin structure
Target of assay
65
histone
histone modification
49
transcription factor
36
broad histone mark
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
47
November, 2017
9
November, 2018
8
October, 2019
4
August, 2017
4
July, 2019
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2607
bam
2300
bigWig
1600
tsv
1128
fastq
966
bed narrowPeak
651
bigBed narrowPeak
257
bed broadPeak
255
bigBed broadPeak
248
bed bed3+
161
txt
153
zippedFastqFolder
77
tagAlign
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
262
Homo sapiens
Biosample type
178
tissue
46
cell line
37
primary cell
1
in vitro differentiated cells
Organ
78
kidney
50
liver
38
brain
36
limb
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
12
blood vessel
10
connective tissue
10
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
262
AMP
Genome assembly (visualization)
243
GRCh38
238
hg19
Lab
260
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
histone modification
narrow histone mark
BIOSAMPLE
ASSAY
262 results
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DNase-seq
ChIP-seq
Hi-C
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
cell line
HepG2
44
Panc1
1
1
primary cell
astrocyte of the cerebellum
1
1
1
brain microvascular endothelial cell
1
1
1
cardiac fibroblast
3
skeletal muscle myoblast
1
2
brain pericyte
1
1
+ See 19 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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