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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
1
DNase-seq
Assay category
67
DNA binding
1
DNA accessibility
Target of assay
49
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
4
control
1
other context
1
other post-translational modification
Date released
59
November, 2017
8
February, 2021
1
October, 2019
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
68
Homo sapiens
Biosample type
416
tissue
138
primary cell
68
cell line
41
in vitro differentiated cells
Organ
59
liver
6
artery
6
blood vessel
6
heart
6
vasculature
1
pancreas
Project
68
AMP
Genome assembly (visualization)
65
hg19
50
GRCh38
Lab
68
AMP-T2D consortium
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
DNase-seq
cell line
HepG2
59
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
Panc1
1
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