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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
7
DNase-seq
6
total RNA-seq
2
ATAC-seq
Assay category
12
DNA binding
9
DNA accessibility
6
Transcription
Target of assay
12
histone
12
histone modification
8
broad histone mark
4
narrow histone mark
Date released
12
August, 2017
6
May, 2022
4
June, 2019
2
November, 2018
1
March, 2019
1
October, 2017
1
October, 2019
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
21
Homo sapiens
Biosample type
26
tissue
1
cell line
Organ
140
kidney
88
bone element
63
liver
brain
47
musculature of body
36
limb
30
heart
27
pancreas
22
epithelium
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
skeleton
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
27
AMP
Genome assembly (visualization)
18
hg19
14
GRCh38
Lab
19
AMP-T2D consortium
6
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
organ_slims!
brain
BIOSAMPLE
ASSAY
27 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
tissue
islet of Langerhans
6
6
2
pancreas
6
2
body of pancreas
4
cell line
Panc1
1
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