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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
41
ATAC-seq
21
snATAC-seq
Assay category
268
DNA accessibility
114
DNA binding
52
Transcription
41
DNA methylation
Date released
187
June, 2019
60
May, 2022
9
November, 2018
7
October, 2019
2
August, 2017
1
March, 2019
1
November, 2020
1
October, 2017
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
268
Homo sapiens
Biosample type
178
tissue
88
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
55
epithelium
48
pancreas
36
limb
33
musculature of body
32
brain
30
heart
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
208
AMP
60
HPAP
Genome assembly (visualization)
206
GRCh38
184
hg19
Lab
206
AMP-T2D consortium
60
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
268 results
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Clear Filters
DNase-seq
ATAC-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
primary cell
pancreatic alpha cell
22
Langerhans cell
21
pancreatic beta cell
13
pancreatic acinar cell
4
cardiac fibroblast
3
+ See 22 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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