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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
114
ChIP-seq
52
single cell RNA-seq
41
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
267
DNA accessibility
114
DNA binding
52
Transcription
41
DNA methylation
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
134
May, 2022
70
November, 2017
40
August, 2017
19
September, 2020
9
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
3101
bam
2870
bigWig
1645
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
468
Homo sapiens
Biosample type
213
tissue
202
primary cell
59
cell line
in vitro differentiated cells
Organ
102
epithelium
101
pancreas
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
321
AMP
153
HPAP
Genome assembly (visualization)
297
hg19
281
GRCh38
Lab
319
AMP-T2D consortium
153
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
474 results
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DNase-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 45 more…
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
+ See 22 more…
cell line
HepG2
58
Panc1
1
See all biosamples
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