Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
1
DNase-seq
Assay category
38
DNA binding
1
DNA accessibility
Target of assay
25
histone
25
histone modification
15
broad histone mark
13
transcription factor
10
narrow histone mark
2
RNA binding protein
Date released
22
August, 2017
15
November, 2017
2
October, 2019
Available data
408
bam
223
fastq
184
tsv
160
bigWig
152
tagAlign
99
bed narrowPeak
95
txt
44
bigBed narrowPeak
39
bed broadPeak
19
bed bedMethyl
19
bigBed bedMethyl
18
bedpe bed3+
18
bigBed broadPeak
16
hic
11
bed bed3+
10
bed bed3
8
csv
4
bed bedgraph
4
hdf5
4
tar
2
ibed
Organism
39
Homo sapiens
Biosample type
21
tissue
14
cell line
4
primary cell
Organ
14
liver
13
musculature of body
6
pancreas
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
adipose tissue
1
brain
1
connective tissue
Project
39
AMP
Genome assembly (visualization)
297
hg19
GRCh38
Lab
39
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
2
inconsistent control read length
assembly!
GRCh38
BIOSAMPLE
ASSAY
39 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
cell line
HepG2
14
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
1
1
Download