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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
Assay category
62
DNA binding
Target of assay
62
histone
62
histone modification
48
transcription factor
34
broad histone mark
28
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
37
August, 2017
22
November, 2017
3
October, 2017
Available data
802
bigWig
786
bed narrowPeak
715
bam
326
bigBed narrowPeak
321
tagAlign
229
fastq
62
bed broadPeak
27
bigBed broadPeak
25
bed bed3+
1
tagAlign bed3+
Organism
56
Homo sapiens
Biosample type
35
tissue
14
cell line
13
primary cell
Organ
14
liver
13
musculature of body
12
brain
12
pancreas
4
epithelium
4
vasculature
blood vessel
2
vein
1
adipose tissue
1
connective tissue
Project
62
AMP
Genome assembly (visualization)
62
hg19
39
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
month_released!
March, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
cell line
HepG2
14
primary cell
skeletal muscle myoblast
11
astrocyte of the cerebellum
1
choroid plexus epithelial cell
1
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