Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
112
ChIP-seq
ATAC-seq
Assay category
199
DNA accessibility
112
DNA binding
Target of assay
63
histone
63
histone modification
49
transcription factor
34
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
70
November, 2017
41
August, 2017
9
November, 2018
October, 2019
3
October, 2017
1
November, 2020
Available data
2973
bam
2791
bigWig
1570
tsv
1316
bed narrowPeak
1297
fastq
948
bigBed narrowPeak
349
tagAlign
311
bed broadPeak
276
bigBed broadPeak
261
bed bed3+
158
txt
114
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
8
csv
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
305
Homo sapiens
Biosample type
207
tissue
58
cell line
45
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
47
brain
46
musculature of body
32
limb
30
heart
18
epithelium
18
pancreas
18
ureter
11
vasculature
10
connective tissue
7
blood vessel
4
eye
3
adipose tissue
2
artery
1
spleen
Project
311
AMP
Genome assembly (visualization)
288
hg19
274
GRCh38
Lab
311
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
month_released!
October, 2019
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
311 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download