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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
103
ChIP-seq
2
ATAC-seq
Assay category
201
DNA accessibility
103
DNA binding
Target of assay
63
histone
63
histone modification
49
transcription factor
34
broad histone mark
29
narrow histone mark
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
63
November, 2017
39
August, 2017
9
November, 2018
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
3039
bam
2821
bigWig
1584
tsv
1488
bed narrowPeak
1269
fastq
879
bigBed narrowPeak
349
tagAlign
304
bed broadPeak
267
bigBed broadPeak
263
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
2
tar
1
bedpe
1
vcf
Organism
298
Homo sapiens
Biosample type
209
tissue
54
cell line
40
primary cell
1
in vitro differentiated cells
Organ
78
kidney
59
liver
46
musculature of body
44
brain
32
limb
30
heart
20
pancreas
18
ureter
16
epithelium
10
connective tissue
9
vasculature
6
blood vessel
4
eye
3
adipose tissue
2
artery
1
spleen
Project
304
AMP
Genome assembly (visualization)
280
hg19
268
GRCh38
Lab
302
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
month_released!
October, 2019
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
304 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
54
primary cell
skeletal muscle myoblast
1
11
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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