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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
DNase-seq
108
ChIP-seq
3
Hi-C
2
ATAC-seq
Assay category
192
DNA accessibility
108
DNA binding
3
3D chromatin structure
Target of assay
61
histone
61
histone modification
47
transcription factor
34
broad histone mark
27
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
173
June, 2019
66
November, 2017
41
August, 2017
9
November, 2018
6
October, 2019
4
October, 2017
2
July, 2019
1
March, 2019
1
November, 2020
Available data
3075
bam
2828
bigWig
1626
bed narrowPeak
1444
tsv
1101
fastq
966
bigBed narrowPeak
391
tagAlign
300
bed broadPeak
263
bigBed broadPeak
252
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
297
Homo sapiens
Biosample type
213
tissue
60
cell line
29
primary cell
1
in vitro differentiated cells
Organ
78
kidney
64
liver
50
brain
46
musculature of body
36
limb
30
heart
epithelium
22
pancreas
19
vasculature
18
ureter
15
blood vessel
11
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
303
AMP
Genome assembly (visualization)
285
hg19
263
GRCh38
Lab
301
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
3
inconsistent assembly
organ_slims!
epithelium
BIOSAMPLE
ASSAY
303 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 45 more…
cell line
HepG2
58
Panc1
1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
1
cardiac fibroblast
3
brain pericyte
1
1
astrocyte of the hippocampus
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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