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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
1
DNase-seq
Assay category
32
DNA binding
1
DNA accessibility
Target of assay
19
histone
19
histone modification
13
transcription factor
11
broad histone mark
8
narrow histone mark
2
RNA binding protein
Date released
16
August, 2017
15
November, 2017
2
October, 2019
Available data
365
bam
293
fastq
227
bigWig
189
tsv
159
bed narrowPeak
155
txt
141
tagAlign
73
zippedFastqFolder
42
bigBed narrowPeak
33
bed broadPeak
18
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
16
bedpe bed3+
15
bed bed3+
15
hic
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
vcf
Organism
33
Homo sapiens
Biosample type
15
tissue
14
cell line
4
primary cell
Organ
14
liver
13
musculature of body
pancreas
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
adipose tissue
1
brain
1
connective tissue
Project
33
AMP
Genome assembly (visualization)
280
hg19
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
2
inconsistent control read length
organ_slims!
pancreas
assembly!
GRCh38
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
DNase-seq
tissue
skeletal muscle tissue
13
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
cell line
HepG2
14
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
1
1
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