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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
15
DNase-seq
Assay category
108
DNA binding
15
DNA accessibility
Target of assay
61
histone
61
histone modification
47
transcription factor
34
broad histone mark
27
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
June, 2019
66
November, 2017
41
August, 2017
9
November, 2018
3
October, 2017
3
October, 2019
1
November, 2020
Available data
2791
bam
2501
bigWig
1420
tsv
1207
bed narrowPeak
1157
fastq
756
bigBed narrowPeak
308
tagAlign
123
bed broadPeak
95
txt
88
bigBed broadPeak
76
bed bed3+
34
bed bedMethyl
34
bigBed bedMethyl
16
bedpe bed3+
13
hic
12
bed bed3
8
csv
4
bed bedgraph
3
hdf5
3
tar
2
ibed
1
tagAlign bed3+
Organism
117
Homo sapiens
Biosample type
59
cell line
46
tissue
17
primary cell
1
in vitro differentiated cells
Organ
61
liver
17
brain
15
pancreas
13
musculature of body
vasculature
8
blood vessel
8
epithelium
4
connective tissue
4
limb
4
vein
2
adipose tissue
2
artery
2
nerve
1
spleen
Project
123
AMP
Genome assembly (visualization)
123
hg19
86
GRCh38
Lab
123
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
organ_slims!
vasculature
month_released!
June, 2019
BIOSAMPLE
ASSAY
123 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
tissue
skeletal muscle tissue
13
islet of Langerhans
6
pancreas
6
brain
3
2
body of pancreas
2
+ See 10 more…
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
osteoblast
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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