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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
DNase-seq
95
ChIP-seq
2
ATAC-seq
Assay category
164
DNA accessibility
95
DNA binding
Target of assay
48
histone
48
histone modification
47
transcription factor
26
broad histone mark
22
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
147
June, 2019
66
November, 2017
28
August, 2017
9
November, 2018
4
October, 2017
3
October, 2019
1
March, 2019
1
November, 2020
Available data
3150
bam
2906
bigWig
1584
bed narrowPeak
1523
tsv
1350
fastq
912
bigBed narrowPeak
377
tagAlign
259
bed broadPeak
235
bigBed broadPeak
226
bed bed3+
160
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
19
bedpe bed3+
18
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
253
Homo sapiens
Biosample type
163
tissue
59
cell line
36
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
47
brain
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
259
AMP
Genome assembly (visualization)
236
hg19
234
GRCh38
Lab
257
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
organ_slims!
vasculature
musculature of body
BIOSAMPLE
ASSAY
259 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 37 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 12 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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