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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
14
DNase-seq
Assay category
62
DNA binding
14
DNA accessibility
Target of assay
45
transcription factor
17
histone
17
histone modification
10
broad histone mark
7
narrow histone mark
5
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
60
November, 2017
7
June, 2019
6
October, 2019
3
November, 2018
Available data
861
bam
771
bigWig
570
bed narrowPeak
468
fastq
437
bigBed narrowPeak
242
tsv
92
tagAlign
76
bed broadPeak
76
bigBed broadPeak
23
bed bed3+
5
hic
4
bed bedMethyl
4
bedpe bed3+
4
bigBed bedMethyl
4
tar
2
hdf5
1
bed bed3
1
csv
1
vcf
Organism
76
Homo sapiens
Biosample type
58
cell line
10
primary cell
8
tissue
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
76
AMP
Genome assembly (visualization)
75
hg19
60
GRCh38
Lab
76
AMP-T2D consortium
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
76 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
2
1
hepatic stellate cell
1
hepatocyte
1
kidney capillary endothelial cell
1
tissue
coronary artery
2
liver
2
tibial artery
2
ascending aorta
1
right lobe of liver
1
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