Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
39
ATAC-seq
16
DNase-seq
6
ChIP-seq
Assay category
55
DNA accessibility
41
DNA methylation
6
DNA binding
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
80
May, 2022
14
June, 2019
4
November, 2017
4
October, 2019
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
102
Homo sapiens
Biosample type
102
primary cell
Organ
102
epithelium
101
pancreas
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
80
HPAP
22
AMP
Genome assembly (visualization)
20
GRCh38
16
hg19
Lab
80
Klaus Kaestner, Upenn
22
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
102 results
search-icon
table-tab-icon
Clear Filters
WGBS
ATAC-seq
DNase-seq
ChIP-seq
primary cell
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
endothelial cell of umbilical vein
2
2
pancreatic acinar cell
4
brain microvascular endothelial cell
1
2
+ See 11 more…
See all biosamples
Download