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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
DNase-seq
6
ChIP-seq
3
Hi-C
Assay category
10
DNA accessibility
6
DNA binding
3
3D chromatin structure
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
8
June, 2019
4
November, 2017
4
October, 2019
3
October, 2022
Available data
285
bigWig
283
bam
173
fastq
147
tsv
145
bed narrowPeak
70
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
15
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
5
tagAlign
3
cool
2
hdf5
1
tar
Organism
19
Homo sapiens
Biosample type
19
primary cell
Organ
71
kidney
63
liver
46
musculature of body
37
brain
36
limb
27
heart
21
pancreas
19
epithelium
18
ureter
16
vasculature
12
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
16
AMP
3
HPAP
Genome assembly (visualization)
20
GRCh38
19
hg19
Lab
16
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
19 results
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DNase-seq
ChIP-seq
Hi-C
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
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