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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
DNase-seq
6
ChIP-seq
3
Hi-C
Assay category
46
DNA accessibility
6
DNA binding
3
3D chromatin structure
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
44
June, 2019
4
November, 2017
4
October, 2019
3
October, 2022
Available data
527
bam
524
bigWig
342
bed narrowPeak
323
tsv
257
fastq
170
bigBed narrowPeak
80
zippedFastqFolder
52
bed broadPeak
52
bigBed broadPeak
51
bed bed3+
14
bed bedMethyl
14
bigBed bedMethyl
13
tagAlign
9
hic
8
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
55
Homo sapiens
Biosample type
28
primary cell
27
tissue
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
25
epithelium
24
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
52
AMP
3
HPAP
Genome assembly (visualization)
50
GRCh38
46
hg19
Lab
52
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
2
inconsistent ontology term
BIOSAMPLE
ASSAY
55 results
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DNase-seq
ChIP-seq
Hi-C
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
+ See 12 more…
tissue
heart
18
heart left ventricle
3
coronary artery
2
right atrium auricular region
2
heart right ventricle
1
+ See 1 more…
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