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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
5
DNase-seq
Assay category
52
DNA binding
5
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
52
November, 2017
3
November, 2018
2
June, 2019
Available data
631
bam
570
bigWig
446
fastq
390
bed narrowPeak
344
bigBed narrowPeak
174
tsv
57
bed broadPeak
57
bigBed broadPeak
46
tagAlign
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
57
Homo sapiens
Biosample type
52
cell line
3
tissue
2
primary cell
Organ
78
kidney
57
liver
41
musculature of body
39
brain
36
limb
30
heart
20
epithelium
18
ureter
17
pancreas
15
vasculature
12
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
57
AMP
Genome assembly (visualization)
57
hg19
44
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
8
inconsistent control read length
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
DNase-seq
cell line
HepG2
52
tissue
liver
2
right lobe of liver
1
primary cell
hepatic stellate cell
1
hepatocyte
1
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